{
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  "Package": "evoFE",
  "Type": "Package",
  "Title": "Evolutionary Feature Engineering",
  "Version": "0.2.0",
  "Authors@R": "person(\"Gustavo\", \"Pereira\", role = c(\"aut\", \"cre\"), email = \"tanopereira@gmail.com\")",
  "Description": "Automates feature engineering using evolutionary\nalgorithms inspired by genetic programming. Starting from raw\ninput features, the package evolves candidate transformation\nrecipes through selection, crossover, and mutation, evaluating\nfitness via cross-validation or train/validation splits with\ngradient-boosted tree models ('LightGBM' or 'XGBoost').\nBuilt-in transformers include arithmetic, logarithmic, and\npower operations, interaction terms, target encoding, quantile\nand log-based binning, principal component analysis, truncated\nsingular value decomposition, Uniform Manifold Approximation\nand Projection (UMAP) dimensionality reduction, and minimum\nspanning tree (MST) graph-based clustering. The evolutionary\nsearch yields an optimised feature recipe that can be applied\nto new data for prediction. Methods are described in McInnes et\nal. (2018) <doi:10.21105/joss.00861>, Ke et al. (2017)\n<https://papers.nips.cc/paper/6907-lightgbm-a-highly-efficient-gradient-boosting-decision-framework>,\nChen and Guestrin (2016) <doi:10.1145/2939672.2939785>,\nGagolewski (2021) <doi:10.1016/j.softx.2021.100722>, Gagolewski\n(2026) <doi:10.32614/CRAN.package.lumbermark>, and Gagolewski\n(2026) <doi:10.32614/CRAN.package.deadwood>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
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  "Repository": "https://tanopereira.r-universe.dev",
  "Date/Publication": "2026-06-09 17:59:39 UTC",
  "RemoteUrl": "https://github.com/tanopereira/evofe",
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    "User": "root"
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  "Author": "Gustavo Pereira [aut, cre]",
  "Maintainer": "Gustavo Pereira <tanopereira@gmail.com>",
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    "create_gene",
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    "evaluate_fitness",
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    "make_tunable",
    "mutate",
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    "register_evaluator",
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      "page": "apply_gene",
      "title": "Apply a single gene to a dataset",
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      "title": "Apply an entire individual's recipe to data",
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        "apply_individual"
      ]
    },
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      "title": "Temperature Scaled Refinement Metric",
      "topics": [
        "compute_ts_refinement"
      ]
    },
    {
      "page": "create_gene",
      "title": "Create a single gene",
      "topics": [
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      ]
    },
    {
      "page": "create_individual",
      "title": "Create an individual",
      "topics": [
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      ]
    },
    {
      "page": "create_transformer",
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      "topics": [
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    },
    {
      "page": "crossover",
      "title": "Crossover two individuals",
      "topics": [
        "crossover"
      ]
    },
    {
      "page": "evaluate_fitness",
      "title": "Evaluate the fitness of an individual",
      "topics": [
        "evaluate_fitness"
      ]
    },
    {
      "page": "evo_evaluators",
      "title": "Global environment for registered model evaluators",
      "topics": [
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    {
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      "topics": [
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      "title": "Run evolutionary feature engineering",
      "topics": [
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    {
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      "topics": [
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    },
    {
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      "title": "Initialize a population",
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    },
    {
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      "topics": [
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      ]
    },
    {
      "page": "mutate",
      "title": "Mutate an individual",
      "topics": [
        "mutate"
      ]
    },
    {
      "page": "plot.evo_recipe",
      "title": "Plot an evo_recipe object",
      "topics": [
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    },
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      "topics": [
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      "topics": [
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      "page": "print.summary_evo_recipe",
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